Welcome to Zebrafish LncRNA Database ZFLNC

About ZFLNC (Zebrafish LncRNA Database)

There is emerging evidence that lncRNAs can be involved in various critical biological processes. Zebrafish is a full-developed model system being used in a variety of basic research and biomedical studies. Hence, it is a good idea to study the role of lncRNA using zebrafish as a model. Here, we constructed ZFLNC -- a comprehensive database of zebrafish lncRNA that is dedicated to offer a zebrafish-based platform for deeply exploring lncRNA function and mechanism, to the relevant academic community. The main data resources of lncRNAs in this database come from NCBI, Ensembl, NONCODE, zflncRNApedia and literature. We also obtained lncRNAs as a supplement by analyzing RNA-Seq datasets from SRA database. We carried out the expression profile, GO annotation, KEGG pathway annotation, conservative analysis and OMIM annotation for those zebrafish lncRNAs. In the current version ZFLNC contain 13,604 lncRNA genes and 21,128 lncRNA transcripts.

Using ZFLNC (Zebrafish LncRNA Database)
Browse ZFLNC

Browse all lncRNA genes or transcripts.

Search

Search an entry or a subset of the database.

BLAST

Find regions of similarity between your sequences.

ID Conversion

Convert ZFLNC ID and other databases ID.

Statistics

The basic statistics of the ZFLNC database.

GBrowser

Find all features in specific location of genome.

Conservation

Browse zebrafish conserved lncRNAs.

OMIM

Browse putative omim related zebrafish lncRNAs.

Download

Download the information in ZFLNC.

Help

More information and usage of ZFLNC database.

Latest News
  • 26 August 2018

    The expression information of lncRNA genes in tissues or embryo and the predicted RNA secondary structure for lncRNA transcripts was added.

  • 20 June 2017

    The advanced search was added to ZFLNC.

  • 7 March 2017

    Modify the appearance of the website.

  • 7 October 2016

    The first version of ZFLNC was publicly released.

  • 9 September 2016

    ZFLNC database website on line.

Contact ZFLNC
Xiang Hu   huxiang@hunnu.edu.cn

State Key Laboratory of Developmental Biology of Freshwater Fish, School of Life Sciences, Hunan Normal University.


Changning Liu   liuchangning@xtbg.ac.cn

Key Laboratory of Tropical Plant Resources and Sustainable Use, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences.


Citation

ZFLNC: a comprehensive and well annotated database for zebrafish lncRNA. Database 2018; 2018:bay114 https://doi.org/10.1093/database/bay114